EGFR-Multiplex 5% AF cfDNA in Plasma

EGFR mutations are driver mutations, they are common and cause lung and breast cancer. The mutations of the SensID EGFR-Multiplex product consist of a selection of TKI sensitive and TKI resistant mutations, which are relevant for the therapy of the Non-Small Cell Lung Cancer.

The EGFR-Multiplex 5% AF cfDNA in plasma product can be used in diagnostics as a positive standard in liquid biopsy assays in your laboratory or R&D department, as well as for validation and development of EGFR diagnostic kits. The background material is human cfDNA of the Ashkenazim Son cell line, as well as human-tech plasma (human recreated).

SKU: SID-000018 Category:

Product description

These products are ideal for digital PCR and/or Next Generation Sequencing (NGS). In particular:
– Validation and development of sequencing protocols (e.g. Whole Genome Sequencing (WGS), Amplicon Sequencing) and PCR protocols
– Determination of the detectiont limit of the method
– to control the extraction efficiency

Fragmentation Size (peak)
~167 bp

Unit Size:
80 ng/ml (total 400 ng)

Mutation:

AA Change (Cosmic ID, mutation type, HGVS nomenclature, Exon)

  • p.G719S (COSV51767289*, Substitution, c.2155G>A, Exon 18)
  • p.E746_A750delELREA (COSV51765066*, Deletion, c.2236_2250del15, Exon 19)
  • p.S752_I759delSPANKEI (COSV51774879*, Deletion, c.2254_2277del24, Exon 19)
  • p.S768I (COSV51768106*, Substitution, c.2303G>T, Exon 20)
  • p.V769_D770insASV (COSV51850427*, Insertion, c.2303_2304ins9, Exon 20)
  • p.T790M (COSV51765492*, Substitution, c.2369C>T, Exon  20)
  • p.L858R (COSV51765161*, Substitution, c.2573T>G, Exon 21)
  • p.L861Q (COSV51766344 *, Substitution, c.2582T>A, Exon 21)

Allelic frequency:
5%

Buffer:
Plasma (human-tech)

Storage:
2-8 °C

Expiry:
stable for 12 months from date of manufacture (as supplied)

Quality control

Fragmentation size:
High Sensitivity DNA Kit Agilent

Allelic Frequency:
dPCR

Quantification:
UV-Vis Spectrophotometry (NIST-Reference method)
Qubit Fluorometry

Technical background

Derived from:
cell line GM24385 (HG002- NA24385 – huAA53E0)

Bioinformatics:
– lot specific sequencing files: LOT Search
– High-confidence variant calls: ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/release/AshkenazimTrio
– Raw datasets and bam files, currently including 10X Genomics, BioNano, Complete Genomics regular and LFR, 300x Illumina paired-end, Illumina 6kb mate-pair, 1000x Ion exome, custom moleculo libraries, ~0.05x Oxford Nanopore, and 70x/30x/30x PacBio: ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG002_NA24385_son/

*GRCh 38 Cosmic v88

Documents

Certificate of Analysis:

Batch Certificate

Lot: 00035

Lot: 00130

other Documents:

Instructions for use

Safety Data Sheet (SDS in other languages ​​available on request. Please contact the support.)

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